Complex Adaptive Traits (CATs) in beneficial Bacilli
Dr. Ilka Bischofs
Publications
- M. Kilian and I. B. Bischofs
Co-evolution at protein-protein interfaces guides inference of stoichiometry of oligomeric protein complexes by de novo structure prediction
Mol. Micro. 120 (5), 763-782, 2023 - L. Ernst, B. Steinfeld, U. Barayeu, T. Klintzsch, M. Kurth , D. Grimm, T. P. Dick, J. G. Rebelein, I. B. Bischofs and Frank Keppler
Methane formation driven by reactive oxygen species across all living organisms
Nature, https://doi.org/10.1038/s41586-022-04511-9, 2022 - A. Dragoš, B. Priyadarshini, Z. Hasan, M. Lenz-Strube, P. J. Kempen, G. Maróti, C. Kaspar, B. Bose, B. M. Burton, I. B. Bischofs and Á. T. Kovács
Pervasive prophage recombination occurs during evolution of spore-forming Bacilli
ISME J. 15, 1344–1358, 2021 - I. B. Bischofs
Sporenbildung bei Bacillus subtilis: Masse oder Klasse
Biospektrum 6/20, S. 606-608, 2020 - A. Mutlu, C. Kaspar, N. Becker and I. B. Bischofs
A spore quality-quantity tradeoff favors diverse sporulation strategies in B. subtilis
The ISME J., 14, 2703–2714, 2020 - H. Babel, P. Naranjo-Meneses, S. Trauth, S. Schulmeister, G. Malengo, V. Sourjik and I. B. Bischofs
Ratiometric population sensing by a pump-probe signaling system in Bacillus subtilis
Nature Communications 11, 1176, 2020 - R. Spilger, T. Schwackenhofer, C. Kaspar, I. Bischofs and K. Rohr
Deep segmentation of bacteria at different stages of the life cycle
Bildverarbeitung für die Medizin. Informatik aktuell. Springer Vieweg, Wiesbaden, 2020 - I. Lytvynenko, H. Paternoga, A. Thrun, A. Balke, T.A. Müller, C.H. Chiang, K. Nagler, G. Tsapraillis, S. Anders, I. Bischofs, J.A. Maupin-Furlow, C. M. T. Spahn and C. A. P. Joazeiro
Alanine tails signal proteolysis in bacterial ribosome-associated quality control
Cell, 178(1),76-90, 2019 - V. Bettenworth, B. Steinfeld, H. Duin, K. Petersen, W. R. Streit, I. Bischofs and A. Becker
Phenotypic heterogeneity in bacterial quorum sensing systems
Journal of Molecular Biology 431 (23), 4530-4546, 2019 - A. Mutlu, S. Trauth, M. Ziesack, K. Nagler, J. Bergeest, K. Rohr, N. Becker, T. Höfer and I. B. Bischofs
Phenotypic memory in Bacillus subtilis links dormancy entry and exit by a spore quantity-quality tradeoff
Nature Communications 9:69, 2018 - H. Babel and I. B. Bischofs
Molecular and cellular factors control signal transduction via switchable allosteric modulator proteins (SAMPs)
BMC Systems Biology 10:35, 2016 - D. Wolf, V. Rippa, J.C. Mobarec, P.Sauer, L. Adlung, P. Kolb and I. B. Bischofs
The quorum sensing regulator ComA from Bacillus subtilis activates transcription using topologically distinct DNA motifs
Nucleic Acids Research 44, No.5, 2160-2172, 2016 - S. Pande, S. Shitut, L. Freund, M. Westermann, F. Bertels, C. Colesie, I. B. Bischofs and C. Kost
Metabolic cross-feeding via inter-cellular nanotubes among bacteria
Nature Communications 6: 6238, 2015 - Liluashvili V.,Bergeest J.-P., Harder N., Ziesack M., Mutlu A., Bischofs I.B. and K. Rohr
Automatic Single-Cell Segmentation and Tracking of Bacterial Cells in Fluorescence Microscopy Images
Informatik aktuell, H. Handels et al., Springer Verlag, Berlin Heidelberg, 2015 - B. Drees, M. Reiger, K. Jung, I.B. Bischofs
A Modular View of the Diversity of Cell-Density-Encoding Schemes in Bacterial Quorum-Sensing Systems
Biophysical Journal 107(1) 266-77, 2014 - S. Trauth, I.B. Bischofs
Ectopic Integration Vectors for Generating Fluorescent Promoter Fusions in Bacillus subtilis with Minimal Dark Noise
PLoS ONE 9(5) e98360, 2014, featured by Bacillus Genetic Stock Center, June 2014 - P. Guthardt Torres, I.B. Bischofs, U.S. Schwarz
Contractile network models for adherent cells
Phys. Rev. E Stat Nonlin Soft Matter Phys, 85:011913, 2012 - I. B. Bischofs
Cell and tissue organization in soft materials: insight from mathematical and biophysical modelling
In: Cell and Tissue Engineering, edited by B. Obradovic, Springer, 2012, p119-134 - I.B. Bischofs, J. Hug, A. Liu, D.M. Wolf and A.P. Arkin
Complexity in bacterial cell-cell communication: Quorum signal integration and subpopulation signaling in the B. subtilis phosphorelay
Proc. Nat. Acad. USA, 106(16), 6459-6464, 2009 - I.B. Bischofs, S. Schmidt and U.S. Schwarz
Effect of adhesion geometry and rigidity on cellular force distributions
Phys. Rev. Letters 103 (4), Art. No. 048101, 2009 - D.M. Wolf, L. Fontaine-Bodin, I.B. Bischofs, G. Price, J. Keasling & A.P. Arkin
Memory in microbes: Quantifying history dependent behaviour in a bacterium
PLoS ONE 3(2) e17000 18324309, 2008 - I.B. Bischofs, F. Klein, D.Lehnert, M. Bastmeyer, U.S. Schwarz
Filamentous network mechanics and active contractility determine cell and tissue shape
Biophysical Journal 95(7), 3488-3496, 2008 - A. Zemel, I.B. Bischofs, S.A. Safran
Active elasticity of gels with contractile cells
Phys. Rev. Letters 97 (12), Art.No. 128103, 2006 - I.B. Bischofs, U.S. Schwarz
Collective effects in cellular structure formation mediated by compliant environments: a Monte Carlo study
Acta Biomaterialia, 2 , 253-265, 2006 - U.S. Schwarz, T. Erdmann, I.B. Bischofs
Focal adhesions as mechanosensors: the two-spring model
Biosystems, 83, 225-232, 2006 - U.S. Schwarz, I.B. Bischofs
Physical determinants of cell organization in soft media
Medical Engineering & Physics 27, 763-772, 2005 - I. B. Bischofs, U.S. Schwarz
Effect of Poisson ratio on cellular structure formation
Phys. Rev. Letters 95 (6), Art. No. 068102, 2005 - I.B. Bischofs, S.A. Safran, U.S. Schwarz
Elastic interactions of active cells with soft materials
Phys. Rev. E 69, Art.No.021911(17), 2004 - I.B. Bischofs, U.S. Schwarz
Cell organization in soft media due to active mechanosensing
Proc. Nat. Acad. USA 100 (16), 9274-9279, 2003 - I.B. Bischofs, V.N. Kostur, P.B. Allen
Polaron and bipolaron defects in a charge density wave: A model for lightly doped BaBiO3
Phys. Rev. B 65 (11), Art. No. 115112, 2002 - P.B. Allen, I.B. Bischofs
Self-trapped exciton defects in a charge density wave: Electronic Excitations of BaBiO3
Phys. Rev. B 65 (11), Art. No. 115113, 2002 - I.B. Bischofs, P.B. Allen, Kostur V.N., R. Bhargarva
Topological doping of a three-dimensional Peierls system: Predicted structure of doped BaBiO3
Phys. Rev. B 66 (17), Art. No. 174108, 2002
ACKNOWLEDGEMENTS
